GEMLeR - Gene Expression Machine Learning Repository

Machine Learning Tools

List of Machine Learning / Data Mining tools supporting GEMLeR file formats:

SystemLinkARFFCSV
Bioconductorhttp://www.bioconductor.orgX
GGobihttp://www.ggobi.orgX
Orangehttp://www.ailab.si/orangeXX
Rhttp://cran.r-project.orgXX
Tanagrahttp://eric.univ.../en/tanagra.htmlXX
WEKAhttp://www.cs.waikato.ac.nz/ml/wekaXX
YALEhttp://rapid-i.comXX

NOTE: Only open-source tools were included in the table above, however there are multiple commercial tools available that support at least one of GEMLeR file formats.



For an extensive overview of the current machine learning / data mining tools we reccomend the following papers:

Xiaojun Chen, Yunming Ye, Graham Williams and Xiaofei Xu, "A Survey of Open Source Data Mining Systems", Lecture Notes in Computer Science, Vol. 4819, 2007, 3-15. Also available at: http://togaware.redirectme.net/papers/pakdd07.pdf

Blaz Zupan, Janez Demsar, "Open-Source Tools for Data Mining", Clinics in Laboratory Medicine, Vol. 28, No. 1. (March 2008), pp. 37-54. [PubMed]

Petra Povalej, Mateja Verlic, Gregor Stiglic, "Discovery Systems", Encyclopedia of Complexity and Systems Science, Section on Data Mining and Knowledge Discovery, Springer, 2009 [In Press].